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  "Package": "LocaTT",
  "Title": "Geographically-Conscious Taxonomic Assignment for Metabarcoding",
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    "diversity",
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    "get_taxonomies.species_binomials",
    "isolate_amplicon",
    "local_taxa_tool",
    "merge_pairs",
    "mlcoef",
    "mlcor",
    "mlformat",
    "mlpredict",
    "mlreg",
    "mlWAIC",
    "normalize",
    "proportion",
    "read.fasta",
    "read.fastq",
    "reverse_complement",
    "richness",
    "sector",
    "singular.detection",
    "singular.proportion",
    "softmax",
    "substitute_wildcards",
    "summarize_quality_scores",
    "template",
    "trim_sequences",
    "truncate_and_merge_pairs",
    "truncate_sequences.length",
    "truncate_sequences.probability",
    "truncate_sequences.quality_score",
    "waic",
    "write.fasta",
    "write.fastq"
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      "page": "adjust_taxonomies",
      "title": "Adjust Taxonomies",
      "topics": [
        "adjust_taxonomies"
      ]
    },
    {
      "page": "binomial_test",
      "title": "Binomial Test",
      "topics": [
        "binomial_test"
      ]
    },
    {
      "page": "blast_command_found",
      "title": "Check BLAST Installation",
      "topics": [
        "blast_command_found"
      ]
    },
    {
      "page": "blast_version",
      "title": "Get BLAST Version",
      "topics": [
        "blast_version"
      ]
    },
    {
      "page": "circle",
      "title": "Draw Circle Polygon",
      "topics": [
        "circle"
      ]
    },
    {
      "page": "contains_wildcards",
      "title": "Check Whether DNA Sequences Contain Wildcard Characters",
      "topics": [
        "contains_wildcards"
      ]
    },
    {
      "page": "coordinates",
      "title": "Generate Circular Coordinates",
      "topics": [
        "coordinates"
      ]
    },
    {
      "page": "cor2cov",
      "title": "Convert Correlation to Covariance Matrix",
      "topics": [
        "cor2cov"
      ]
    },
    {
      "page": "dcopula",
      "title": "Density of the Gaussian Copula",
      "topics": [
        "dcopula"
      ]
    },
    {
      "page": "ddirmult",
      "title": "Density of the Dirichlet-Multinomial Distribution",
      "topics": [
        "ddirmult"
      ]
    },
    {
      "page": "decode_quality_scores",
      "title": "Decode DNA Sequence Quality Scores",
      "topics": [
        "decode_quality_scores"
      ]
    },
    {
      "page": "detection",
      "title": "Grouped Detection Plot",
      "topics": [
        "detection"
      ]
    },
    {
      "page": "dissimilarity",
      "title": "Bray-Curtis Dissimilarity (Proportion Form)",
      "topics": [
        "dissimilarity"
      ]
    },
    {
      "page": "diversity",
      "title": "Hill Diversity",
      "topics": [
        "diversity"
      ]
    },
    {
      "page": "djsdm",
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      "topics": [
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      ]
    },
    {
      "page": "dmpredict",
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      "topics": [
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      ]
    },
    {
      "page": "dmreg",
      "title": "Fitting Dirichlet-Multinomial Regression Models",
      "topics": [
        "dmreg"
      ]
    },
    {
      "page": "dmvlogis",
      "title": "Density of the Multivariate Logistic Distribution",
      "topics": [
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      ]
    },
    {
      "page": "dmWAIC",
      "title": "WAIC for Dirichlet-Multinomial Regression Models",
      "topics": [
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      ]
    },
    {
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      "title": "Expand Taxonomies",
      "topics": [
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    },
    {
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      "title": "Filter DNA Sequences by PCR Replicates",
      "topics": [
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    },
    {
      "page": "format_reference_database",
      "title": "Format Reference Databases",
      "topics": [
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      ]
    },
    {
      "page": "get_consensus_taxonomy",
      "title": "Get Consensus Taxonomy from Taxonomic Strings",
      "topics": [
        "get_consensus_taxonomy"
      ]
    },
    {
      "page": "get_taxonomic_level",
      "title": "Get Specified Taxonomic Level from Taxonomic Strings",
      "topics": [
        "get_taxonomic_level"
      ]
    },
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      "title": "Get Taxonomies from IUCN Red List Files",
      "topics": [
        "get_taxonomies.IUCN"
      ]
    },
    {
      "page": "get_taxonomies.species_binomials",
      "title": "Get NCBI Taxonomies from Species Binomials",
      "topics": [
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      ]
    },
    {
      "page": "isolate_amplicon",
      "title": "Trim DNA Sequences to an Amplicon Region Using Forward and Reverse Primer Sequences",
      "topics": [
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    },
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      "title": "Perform Geographically-Conscious Taxonomic Assignment",
      "topics": [
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    {
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      "title": "Merge Forward and Reverse DNA Sequence Reads",
      "topics": [
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      "title": "Read FASTQ Files",
      "topics": [
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      "title": "Get the Reverse Complement of a DNA Sequence",
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